Parkinson’s Disease (PD) is a prevalent progressive neurodegenerative condition affecting millions globally. Research has found that individuals with PD have a reduced risk of certain cancers, such as colon, lung, and rectal cancers, but an increased risk of brain cancer. Therefore, there is an urgent need for the development of advanced PD diagnostic methods and for investigating the relationships between risk factors, such as lifestyle due to handedness associated with various types of cancers. Recent ad- vancements in magnetic resonance imaging have enhanced PD diagnosis, reducing misdiagnosis and facilitating more accurate disease progression monitoring. Nevertheless, challenges exist, particularly in the distinction of PD between left-handed and right-handed patients over time. This survey provides an overview of contemporary deep learning-based imag- ing analysis methodologies, encompassing both non-longitudinal and lon- gitudinal contexts. We also explore existing limitations and prospects for refinement to gain deeper insights. These insights are poised to inform the development of personalized treatment strategies for PD patients while elucidating the current disparities between deep learning models and their efficacious implementation in clinical practice.
Gu, Y.; Wang, Z.; Wang, Y.; Gong, Y.; Li, C. Exploring Longitudinal MRI-Based Deep Learning Analysis in Parkinson’s Patients - A Short Survey Focus on Handedness. Cancer Insight, 2024, 3, 32. https://doi.org/10.58567/ci03010006
AMA Style
Gu Y, Wang Z, Wang Y, Gong Y, Li C. Exploring Longitudinal MRI-Based Deep Learning Analysis in Parkinson’s Patients - A Short Survey Focus on Handedness. Cancer Insight; 2024, 3(1):32. https://doi.org/10.58567/ci03010006
Chicago/Turabian Style
Gu, Yuan; Wang, Ziyang; Wang, Yuli; Gong, Yishu; Li, Chen 2024. "Exploring Longitudinal MRI-Based Deep Learning Analysis in Parkinson’s Patients - A Short Survey Focus on Handedness" Cancer Insight 3, no.1:32. https://doi.org/10.58567/ci03010006
APA style
Gu, Y., Wang, Z., Wang, Y., Gong, Y., & Li, C. (2024). Exploring Longitudinal MRI-Based Deep Learning Analysis in Parkinson’s Patients - A Short Survey Focus on Handedness. Cancer Insight, 3(1), 32. https://doi.org/10.58567/ci03010006
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G. DeMaagd and A. Philip. (2015). Parkinson’s disease and its management: part 1: disease entity, risk factors, pathophysiology, clinical presentation, and diagnosis. Pharmacy and therapeutics, vol. 40, no. 8, p. 504. https://pubmed.ncbi.nlm.nih.gov/26236139
A. Kouli, K. M. Torsney, and W.-L. Kuan. (2018). Parkinson’s disease: etiology, neuropathology, and pathogenesis. Exon Publications, pp. 3–26. https://doi.org/10.15586/codonpublications.parkinsonsdisease.2018.ch1
Z. Ou, J. Pan, S. Tang, D. Duan, D. Yu, H. Nong, and Z. Wang. (2021). Global trends in the incidence, prevalence, and years lived with disability of parkinson’s disease in 204 countries/territories from 1990 to 2019. Fron- tiers in public health, vol. 9, p. 776847. https://doi.org/10.3389/fpubh.2021.776847
J. Y. S. Lee, J. H. Ng, S. E. Saffari, and E.-K. Tan. (2022). Parkinson’s disease and cancer: a systematic review and meta-analysis on the influence of lifestyle habits, genetic variants, and gender. Aging (Albany NY), vol. 14, no. 5, p. 2148. https://doi.org/10.18632/aging.203932
V. Sachdev, X. Tian, Y. Gu, J. Nichols, S. Sidenko, W. Li, A. Beri, W. A. Layne, D. Allen, C. O. Wu, et al. (2021). A phenotypic risk score for predicting mortality in sickle cell disease. British journal of haematology, vol. 192, no. 5, pp. 932–941. https://doi.org/10.1111/bjh.17342
R. Constantinescu, M. Romer, K. Kieburtz, and D. I. of the Parkinson Study Group. (2007). Malignant melanoma in early parkinson’s disease: the datatop trial. Movement disorders, vol. 22, no. 5, pp. 720–722. https://doi.org/10.1002/mds.21273
V. Sachdev, Y. Gu, J. Nichols, W. Li, S. Sidenko, D. Allen, C. Wu, and S. L. Thein. (2019). A machine learning algorithm to improve risk assessment for patients with sickle cell disease. Blood, vol. 134, p. 893. https://doi.org/10.1182/blood-2019-125846
K. Rugbjerg, S. Friis, C. F. Lassen, B. Ritz, and J. H. Olsen. (2012). Malignant melanoma, breast cancer and other cancers in patients with parkinson’s disease. International journal of cancer, vol. 131, no. 8, pp. 1904–1911. https://doi.org/10.1002/ijc.27443
K. H. Fiala, J. Whetteckey, and B. V. Manyam. (2003). Malignant melanoma and levodopa in parkinson’s disease: causality or coincidence?. Parkinsonism & related disorders, vol. 9, no. 6, pp. 321–327. https://doi.org/10.1016/s1353-8020(03)00040-3
L.-M. Sun, J.-A. Liang, S.-N. Chang, F.-C. Sung, C.-H. Muo, and C.-H. Kao. (2011). Analysis of parkinson’s disease and subsequent cancer risk in taiwan: a nationwide population-based cohort study. Neuroepidemiology, vol. 37, no. 2, pp. 114–119. https://doi.org/10.1159/000331489
L. Chougar, N. Pyatigorskaya, B. Degos, D. Grabli, and S. Lehéricy. (2020). The role of magnetic resonance imaging for the diagnosis of atypical parkinsonism. Frontiers in Neurology, vol. 11, p. 665. https://doi.org/10.3389/fneur.2020.00665
Y. J. Bae, J.-M. Kim, C.-H. Sohn, J.-H. Choi, B. S. Choi, Y. S. Song, Y. Nam, S. J. Cho, B. Jeon, and J. H. Kim. (2021). Imaging the substantia nigra in parkinson disease and other parkinsonian syndromes. Radiology, vol. 300, no. 2, pp. 260–278. https://doi.org/10.1148/radiol.2021203341
S. Ghaderi, A. Karami, A. Ghalyanchi-Langeroudi, N. Abdi, S. S. S. Jalali, M. Rezaei, P. Kordestani-Moghadam, S. Banisharif, M. Jalali, S. Mohammadi, et al. (2023). Mri findings in movement disorders and associated sleep dis- turbances. American Journal of Nuclear Medicine and Molecular Imaging, vol. 13, no. 3, p. 77. https://pubmed.ncbi.nlm.nih.gov/37457325
V. P. Grover, J. M. Tognarelli, M. M. Crossey, I. J. Cox, S. D. Taylor- Robinson, and M. J. McPhail. (2015). Magnetic resonance imaging: principles and techniques: lessons for clinicians. Journal of clinical and experimental hepatology, vol. 5, no. 3, pp. 246–255. https://doi.org/10.1016/j.jceh.2015.08.001
M. Cenek, M. Hu, G. York, and S. Dahl. (2018). Survey of image processing techniques for brain pathology diagnosis: Challenges and opportunities. Frontiers in Robotics and AI, vol. 5, p. 120. https://doi.org/10.3389/frobt.2018.00120
M. Somers, L. S. Shields, M. P. Boks, R. S. Kahn, and I. E. Sommer. (2015). Cognitive benefits of right-handedness: a meta-analysis. Neuroscience & Biobehavioral Reviews, vol. 51, pp. 48–63. https://doi.org/10.1016/j.neubiorev.2015.01.003
N. Verreyt, G. M. Nys, P. Santens, and G. Vingerhoets. (2011). Cognitive differences between patients with left-sided and right-sided parkinson’s disease. a review. Neuropsychology review, vol. 21, pp. 405–424. https://doi.org/10.1007/s11065-011-9182-x
A. Wiberg, M. Ng, Y. Al Omran, F. Alfaro-Almagro, P. McCarthy, J. Marchini, D. L. Bennett, S. Smith, G. Douaud, and D. Furniss. (2019). Handedness, language areas and neuropsychiatric diseases: insights from brain imaging and genetics. Brain, vol. 142, no. 10, pp. 2938–2947. https://doi.org/10.1093/brain/awz257
J. L. Adams, T. Kangarloo, B. Tracey, P. O’Donnell, D. Volfson, R. D. Latzman, N. Zach, R. Alexander, P. Bergethon, J. Cosman, et al. (2023). Using a smartwatch and smartphone to assess early parkinson’s disease in the watch-pd study. npj Parkinson’s Disease, vol. 9, no. 1, p. 64. https://doi.org/10.1038/s41531-023-00497-x
Y. Wang, R. Herbst, and S. Abbaszadeh. (2021). Development and characterization of modular readout design for two-panel head-and-neck dedicated pet system based on czt detectors. IEEE Transactions on Radiation and Plasma Medical Sciences, vol. 6, no. 5, pp. 517–521. https://doi.org/10.1109/TRPMS.2021.3111547
M. Li, Y. Wang, and S. Abbaszadeh. (2020). Development and initial characterization of a high-resolution pet detector module with doi. Biomedical physics & engineering express, vol. 6, no. 6, p. 06502. https://doi.org/10.1088/2057-1976/abbd4f
Y. Wang, L. Tao, S. Abbaszadeh, and C. Levin (2021). Further investigations of a radiation detector based on ionization-induced modulation of optical polarization. Physics in Medicine & Biology, vol. 66, no. 5, p. 055013. https://doi.org/10.1088/1361-6560/abe027
Y. Wang, Y. Li, F. Yi, J. Li, S. Xie, Q. Peng, and J. Xu. (2019). Two-crossed- polarizers based optical property modulation method for ionizing radiation detection for positron emission tomography. Physics in Medicine & Biology, vol. 64, no. 13, p. 135017. https://doi.org/10.1088/1361-6560/ab23cb
S. Jiang, Y. Gu, and E. Kumar. (2023). Magnetic resonance imaging (mri) brain tumor image classification based on five machine learning algorithms. Cloud Computing and Data Science, pp. 122–133. https://doi.org/10.37256/ccds.4220232740
H. Zhang, Y. Wang, J. Qi, and S. Abbaszadeh. (2020). Penalized maximum- likelihood reconstruction for improving limited-angle artifacts in a dedicated head and neck pet system. Physics in Medicine & Biology, vol. 65, no. 16, p. 165016. https://doi.org/10.1088/1361-6560/ab8c92
R. B. Postuma, D. Berg, M. Stern, W. Poewe, C. W. Olanow, W. Oertel, J. Obeso, K. Marek, I. Litvan, A. E. Lang, et al. (2015). Mds clinical diagnostic criteria for parkinson’s disease. Movement disorders, vol. 30, no. 12, pp. 1591–1601. https://doi.org/10.1002/mds.26424
M. Ulla, J. M. Bonny, L. Ouchchane, I. Rieu, B. Claise, and F. Durif (2013). Is r2* a new mri biomarker for the progression of parkinson’s disease? a longitudinal follow-up. PloS one, vol. 8, no. 3, p. e57904. https://doi.org/10.1371/journal.pone.0057904
B. D. Berman, S. G. Horovitz, B. Morel, and M. Hallett. (2012). Neural cor- relates of blink suppression and the buildup of a natural bodily urge. Neuroimage, vol. 59, no. 2, pp. 1441–1450. https://doi.org/10.1016/j.neuroimage.2011.08.050
D. J. Brooks. (2010). Imaging approaches to parkinson disease. Journal of Nu- clear Medicine, vol. 51, no. 4, pp. 596–609. https://doi.org/10.2967/jnumed.108.059998
J. Kassubek (2021). Applied Neuroimaging Editor’s Pick 2021. Frontiers Media SA, Y. Wang, A. Feng, Y. Xue, M. Shao, A. M. Blitz, M. D. Luciano, Carass, and J. L. Prince. (2023). Investigation of probability maps in deep- learning-based brain ventricle parcellation. in Medical Imaging 2023: Image Processing, vol. 12464, pp. 565–570, SPIE. https://doi.org/10.1117/12.2653999
Y. Wang, A. Feng, Y. Xue, L. Zuo, Y. Liu, A. M. Blitz, M. G. Luciano, Carass, and J. L. Prince. (2023). Automated ventricle parcellation and evan’s ratio computation in˜ pre-˜ and˜ post-surgical˜ ventriculomegaly. arXiv preprint arXiv:2303.01922. https://doi.org/10.1109/ISBI53787.2023.10230729
M. Hutchinson and U. Raff. (1999). Parkinson’s disease: a novel mri method for determining structural changes in the substantia nigra. Journal of Neurology, Neurosurgery & Psychiatry, vol. 67, no. 6, pp. 815–818. https://doi.org/10.1136/jnnp.67.6.815
M. Hutchinson and U. Raff. (2008). Detection of parkinson’s disease by mri: Spin-lattice distribution imaging. Movement disorders: official journal of the Movement Disorder Society, vol. 23, no. 14, pp. 1991–1997. https://doi.org/10.1002/mds.22210
M. Hutchinson, U. Raff, and S. Lebedev. (2003). Mri correlates of pathology in parkinsonism: segmented inversion recovery ratio imaging (sirrim). Neuroimage, vol. 20, no. 3, pp. 1899–1902. https://doi.org/10.1136/jnnp.67.6.815
P. Mahlknecht, A. Hotter, A. Hussl, R. Esterhammer, M. Schocke, and K. Seppi. (2010). Significance of mri in diagnosis and differential diagnosis of parkinson’s disease. Neurodegenerative Diseases, vol. 7, no. 5, pp. 300-318. https://doi.org/10.1159/000314495
S. T. Schwarz, T. Rittman, V. Gontu, P. S. Morgan, N. Bajaj, and D. P. Auer. (2011). T1-weighted mri shows stagedependent substantia nigra signal loss in parkinson’s disease. Movement Disorders, vol. 26, no. 9, pp. 1633–1638. https://doi.org/10.1002/mds.23722
K. Nakamura and K. Sugaya. (2014). Neuromelanin-sensitive magnetic resonance imaging: a promising technique for depicting tissue characteristics containing neuromelanin. Neural regeneration research, vol. 9, no. 7, p. 759. https://doi.org/10.4103/1673-5374.131583
S. Reimao, P. Pita Lobo, D. Neutel, L. Correia Guedes, M. Coelho, M. Rosa, J. Ferreira, D. Abreu, N. Gonçalves, C. Morgado, et al. (2015). Substantia nigra neuromelanin magnetic resonance imaging in de novo parkinson’s disease patients. European Journal of Neurology, vol. 22, no. 3, pp. 540–546. https://doi.org/10.1111/ene.12613
S. M. Smith, M. Jenkinson, M. W. Woolrich, C. F. Beckmann, T. E. Behrens, H. Johansen-Berg, P. R. Bannister, M. De Luca, I. Drobnjak, D. E. Flitney, et al. (2004). Advances in functional and structural mr image analysis and implementation as fsl. Neuroimage, vol. 23, pp. S208–S219. https://doi.org/10.1016/j.neuroimage.2004.07.051
Y. Zhang, I.-W. Wu, S. Buckley, C. S. Coffey, E. Foster, S. Mendick, J. Seibyl, and N. Schuff. (2015). Diffusion tensor imaging of the nigrostriatal fibers in parkinson’s disease. Movement Disorders, vol. 30, no. 9, pp. 1229–1236. https://doi.org/10.1002/mds.26251
J. H. O. Barbosa, A. C. Santos, V. Tumas, M. Liu, W. Zheng, E. M. Haacke, and C. E. G. Salmon. (2015). Quantifying brain iron deposition in patients with parkinson’s disease using quantitative susceptibility mapping, r2 and r2. Magnetic resonance imaging, vol. 33, no. 5, pp. 559–565. https://doi.org/10.1016/j.mri.2015.02.021
A. Tessitore, F. Esposito, C. Vitale, G. Santangelo, M. Amboni, A. Russo, D. Corbo, G. Cirillo, P. Barone, and G. Tedeschi. (2012). Default-mode network connectivity in cognitively unimpaired patients with parkinson disease. Neurology, vol. 79, no. 23, pp. 2226–2232. https://doi.org/10.1212/wnl.0b013e31827689d6
E. Tolosa, A. Garrido, S. W. Scholz, and W. Poewe. (2021). Challenges in the diagnosis of parkinson’s disease. The Lancet Neurology, vol. 20, no. 5, pp. 385–39 . https://doi.org/10.1016/s1474-4422(21)00030-2
J. Volkmann, E. Moro, and R. Pahwa. (2006). Basic algorithms for the programming of deep brain stimulation in parkinson’s disease. Movement disorders: official journal of the Movement Disorder Society, vol. 21, no. S14, pp. S284–S289. https://doi.org/10.1002/mds.20961
P. Aljabar, R. A. Heckemann, A. Hammers, J. V. Hajnal, and D. Rueckert. (2009). Multi-atlas based segmentation of brain images: atlas selection and its effect on accuracy. Neuroimage, vol. 46, no. 3, pp. 726–738. https://doi.org/10.1016/j.neuroimage.2009.02.018
P. Coupé, J. V. Manjón, V. Fonov, J. Pruessner, M. Robles, and D. L. Collins. (2011). Patch-based segmentation using expert priors: Application to hippocampus and ventricle segmentation. NeuroImage, vol. 54, no. 2, pp. 940–954. https://doi.org/10.1016/j.neuroimage.2010.09.018
Y. Xiao, S. Beriault, G. B. Pike, and D. L. Collins. (2012). Multicontrast multiecho flash mri for targeting the subthalamic nucleus. Magnetic resonance imaging, vol. 30, no. 5, pp. 627–640. https://doi.org/10.1016/j.mri.2012.02.006
Y. Xiao, V. S. Fonov, S. Beriault, I. Gerard, A. F. Sadikot, G. B. Pike, and D. L. Collins. (2015). Patch-based label fusion segmentation of brainstem structures with dual-contrast mri for parkinson’s disease. International journal of computer assisted radiology and surgery, vol. 10, pp. 1029–1041. https://doi.org/10.1007/s11548-014-1119-4
J. Langley, D. E. Huddleston, X. Chen, J. Sedlacik, N. Zachariah, and X. Hu. (2015). A multicontrast approach for comprehensive imaging of substantia nigra. Neuroimage, vol. 112, pp. 7–13. https://doi.org/10.1016/j.neuroimage.2015.02.045
R. Krupička, S. Mareček, C. Malá, M. Lang, O. Klempíř, T. Duspivová, R. Široká, T. Jarošíková, J. Keller, K. Šonka, et al. (2019). Automatic substantia nigra segmentation in neuromelanin-sensitive mri by deep neural network in patients with prodromal and manifest synucleinopathy. Physiological Research, vol. 68, pp. S453–S458. https://doi.org/10.33549/physiolres.934380
O. Ronneberger, P. Fischer, and T. Brox. (2015). U-net: Convolutional networks for biomedical image segmentation. in Medical Image Computing and Computer-Assisted Intervention–MICCAI 2015: 18th International Conference, Munich, Germany, October 5-9, 2015, Proceedings, Part III 18, pp. 234–241, Springer. https://doi.org/10.1007/978-3-319-24574-4_28
F. Milletari, N. Navab, and S.-A. Ahmadi. (2016). V-net: Fully convolutional neural networks for volumetric medical image segmentation. In 2016 fourth international conference on 3D vision (3DV), pp. 565–571, Ieee. https://doi.org/10.1109/3DV.2016.79
Z. Wang and I. Voiculescu. (2021). Quadruple augmented pyramid network for multi-class covid-19 segmentation via ct. In 2021 43rd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), pp. 2956–2959, IEEE. https://doi.org/10.1109/embc46164.2021.9629904
H. Zhao, J. Shi, X. Qi, X. Wang, and J. Jia. (2017). Pyramid scene parsing network. In Proceedings of the IEEE conference on computer vision and pattern recognition, pp. 2881–2890. https://doi.org/10.48550/arXiv.1612.01105
J. Song, Y. Gu, and E. Kumar. (2023). Chest disease image classification based on spectral clustering algorithm. Research Reports on Computer Science, pp. 77–90. https://doi.org/10.37256/rrcs.2120232742
D. Zhang, F. Zhou, Y. Wei, X. Yang, and Y. Gu. (2023). Unleashing the power of self-supervised image denoising: A comprehensive review. arXiv preprint arXiv:2308.00247. https://doi.org/10.48550/arXiv.2308.00247
S. Jiang, Y. Gu, and E. Kumar. (2023). Stroke risk prediction using artificial intelligence techniques through electronic health records. Artificial Intelligence Evolution, pp. 88–98. https://doi.org/10.37256/aie.4120232744
Y. Gong, Z. Wang, Y. Wang, X. Li, and Y. Gu. (2023). Longitudinal analysis of step counts in parkinson disease patients: Insights from a web-based application. medRxiv, pp. 2023–11. https://doi.org/10.1101/2023.11.22.23298898
Z. Zhang, S. Li, Z. Wang, and Y. Lu. (2020). A novel and efficient tumor detection framework for pancreatic cancer via ct images.In 2020 42nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), pp. 1160–1164, IEEE . https://doi.org/10.1109/embc44109.2020.9176172
S. Hays, L. Zuo, Y. Wang, M. G. Luciano, A. Carass, and J. L. Prince. (2023). Exploring the optimal operating mr contrast for brain ventricle parcellation. In Medical Imaging with Deep Learning, short paper track. https://doi.org/10.48550/arXiv.2304.02056
H. Yu, L. T. Yang, Q. Zhang, D. Armstrong, and M. J. Deen. (2021). Convolutional neural networks for medical image analysis: state-of-the-art, comparisons, improvement and perspectives. Neurocomputing, vol. 444, pp. 92–110. http://dx.doi.org/10.1016/j.neucom.2020.04.157
Z. Zhou, M. M. Rahman Siddiquee, N. Tajbakhsh, and J. Liang. (2018). Unet++: A nested u-net architecture for medical image segmentation. In Deep Learning in Medical Image Analysis and Multimodal Learning for Clinical Decision Support: 4th International Workshop, DLMIA 2018, and 8th International Workshop, ML-CDS 2018, Held in Conjunction with MIC- CAI 2018, Granada, Spain, September 20, 2018, Proceedings 4, pp. 3–11, Springer. https://doi.org/10.1007/978-3-030-00889-5_1
F. Isensee, P. F. Jaeger, S. A. Kohl, J. Petersen, and K. H. Maier-Hein. (2021). nnu-net: a self-configuring method for deep learning-based biomedical image segmentation. Nature methods, vol. 18, no. 2, pp. 203–211. https://doi.org/10.1038/s41592-020-01008-z
J. Chen, Y. Lu, Q. Yu, X. Luo, E. Adeli, Y. Wang, L. Lu, A. L. Yuille, and Y. Zhou. (2021). Transunet: Transformers make strong encoders for medical image segmentation. arXiv preprint arXiv:2102.04306. https://doi.org/10.48550/arXiv.2102.04306
W. Li, Y. M. Tang, Z. Wang, K. M. Yu, and S. To. (2022). Atrous residual inter- connected encoder to attention decoder framework for vertebrae segmentation via 3d volumetric ct images. Engineering Applications of Artificial Intelligence, vol. 114, p. 105102. https://doi.org/10.48550/arXiv.2104.03715
Y. Wang and J. Yi. (2023). Deep learning-based image registration method: with application to scanning laser ophthalmoscopy (slo) longitudinal images. In Medical Imaging 2023: Image Processing, vol. 12464, pp. 601–605, SPIE. http://dx.doi.org/10.1117/12.2654070
P. Zhou, Z. Liu, H. Wu, Y. Wang, Y. Lei, and S. Abbaszadeh. (2020). Automatically detecting bregma and lambda points in rodent skull anatomy images. PloS one, vol. 15, no. 12, p. e0244378. https://doi.org/10.1371/journal.pone.0244378
Ö. Çiçek, A. Abdulkadir, S. S. Lienkamp, T. Brox, and O. Ronneberger. (2016). 3d u-net: learning dense volumetric segmentation from sparse annotation. In Medical Image Computing and Computer-Assisted Intervention– MICCAI 2016: 19th International Conference, Athens, Greece, October 17-21, 2016, Proceedings, Part II 19, pp. 424–432, Springer. https://doi.org/10.48550/arXiv.1606.06650
O. Oktay, J. Schlemper, L. L. Folgoc, M. Lee, M. Heinrich, K. Misawa, K. Mori, S. McDonagh, N. Y. Hammerla, B. Kainz, et al. (1804). Attention u-net: Learning where to look for the pancreas. arxiv 2018. arXiv preprint arXiv:1804.03999. https://doi.org/10.48550/arXiv.1804.03999
O. Oktay, J. Schlemper, L. L. Folgoc, M. Lee, M. Heinrich, K. Misawa, K. Mori, S. McDonagh, N. Y. Hammerla, B. Kainz, et al. (2018). “Attention u-net: Learning where to look for the pancreas. arXiv preprint arXiv:1804.03999 https://doi.org/10.48550/arXiv.1804.03999
H. Huang, L. Lin, R. Tong, H. Hu, Q. Zhang, Y. Iwamoto, X. Han, Y.-W. Chen, and J. Wu. (2020). Unet 3+: A full-scale connected unet for medical image segmentation. In ICASSP 2020-2020 IEEE international conference on acoustics, speech and signal processing (ICASSP), pp. 1055–1059, IEEE. https://doi.org/10.48550/arXiv.2004.08790
Z. Wang, M. Su, J.-Q. Zheng, and Y. Liu. (2023). Densely connected swinunet for multiscale information aggregation in medical image segmentation. In 2023 IEEE International Conference on Image Processing (ICIP), pp. 940–944, IEEE. http://dx.doi.org/10.1109/ICIP49359.2023.10222451
N. Ibtehaz and M. S. Rahman. (2020). Multiresunet: Rethinking the u-net architecture for multimodal biomedical image segmentation. Neural networks, vol. 121, pp. 74–87. https://doi.org/10.1016/j.neunet.2019.08.025
K. He, X. Zhang, S. Ren, and J. Sun. (2016). Deep residual learning for image recognition. In Proceedings of the IEEE conference on computer vision and pattern recognition, pp. 770–778. https://doi.org/10.1109/CVPR.2016.90
A. Vaswani, N. Shazeer, N. Parmar, J. Uszkoreit, L. Jones, A. N. Gomez, Ł. Kaiser, and I. Polosukhin. (2017). Attention is all you need. Advances in neural information processing systems, vol. 30. https://doi.org/10.48550/arXiv.1706.03762
A. Dosovitskiy, L. Beyer, A. Kolesnikov, D. Weissenborn, X. Zhai, T. Unterthiner, M. Dehghani, M. Minderer, G. Heigold, S. Gelly, et al. (2020). An image is worth 16x16 words: Transformers for image recognition at scale. arXiv preprint arXiv:2010.11929. https://doi.org/10.48550/arXiv.2010.11929
Y. Gu, Y. Gong, M. Wang, S. Jiang, C. Li, and Z. Yuan. (2023). Enhancing kidney failure analysis: Web application development for longitudinal trajectory clustering. medRxiv, pp. 2023–05. https://doi.org/10.1101/2023.05.31.23290804
Z. Liu, Y. Lin, Y. Cao, H. Hu, Y. Wei, Z. Zhang, S. Lin, and B. Guo. (2021). Swin transformer: Hierarchical vision transformer using shifted windows. In Proceedings of the IEEE/CVF international conference on computer vision, pp. 10012–10022. https://doi.org/10.1109/ICCV48922.2021.00986
X. Chen, Y. Yuan, G. Zeng, and J. Wang. (2021). Semi-supervised semantic segmentation with cross pseudo supervision. In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 2613–2622. https://doi.org/10.48550/arXiv.2106.01226
A. Tarvainen and H. Valpola. (2017). Mean teachers are better role models: Weight-averaged consistency targets improve semi-supervised deep learning results. Advances in neural information processing systems, vol. 30. https://doi.org/10.48550/arXiv.1703.01780
Z. Wang, J.-Q. Zheng, and I. Voiculescu. (2022). An uncertainty-aware trans- former for mri cardiac semantic segmentation via mean teachers. In Annual Conference on Medical Image Understanding and Analysis, pp. 494– 507, Springer. https://doi.org/10.1007/978-3-031-12053-4_37
K. Sohn, D. Berthelot, N. Carlini, Z. Zhang, H. Zhang, C. A. Raffel, E. D. Cubuk, A. Kurakin, and C.-L. Li. (2020). Fixmatch: Simplifying semi-supervised learning with consistency and confidence. Advances in neural information processing systems, vol. 33, pp. 596–608. https://doi.org/10.48550/arXiv.2001.07685
Z. Wang and I. Voiculescu. (2022). Triple-view feature learning for medical image segmentation. In MICCAI Workshop on Resource-Efficient Medical Image Analysis, pp. 42–54, Springer. https://doi.org/10.1007/978-3-031-16876-5_5
D. S. Kermany, M. Goldbaum, W. Cai, C. C. Valentim, H. Liang, S. L. Baxter, A. McKeown, G. Yang, X. Wu, F. Yan, et al. (2018). Identifying medical diagnoses and treatable diseases by image-based deep learning. cell, vol. 172, no. 5, pp. 1122–1131. https://doi.org/10.1016/j.cell.2018.02.010
P. R. Magesh, R. D. Myloth, and R. J. Tom. (2020). An explainable machine learning model for early detection of parkinson’s disease using lime on datscan imagery. Computers in Biology and Medicine, vol. 126, p. 104041. https://doi.org/10.1016/j.compbiomed.2020.104041
Z. Wang and C. Ma. (2023). Dual-contrastive dual-consistency dual-transformer: A semi-supervised approach to medical image segmentation. In Proceedings of the IEEE/CVF International Conference on Computer Vision, pp.870–879.https://openaccess.thecvf.com/content/ICCV2023W/NIVT/papers/Wang_Dual-Contrastive_Dual-Consistency_Dual-Transformer_A_Semi-Supervised_Approach_to_Medical_Image_Segmentation_ICCVW_2023_paper.pdf
B. C. Tedeschini, S. Savazzi, R. Stoklasa, L. Barbieri, I. Stathopoulos, M. Nicoli, and L. Serio. (2022). Decentralized federated learning for healthcare networks: A case study on tumor segmentation. IEEE Access, vol. 10, pp. 8693–8708. http://dx.doi.org/10.1109/ACCESS.2022.3141913
Z. Fan, J. Su, K. Gao, D. Hu, and L.-L. Zeng. (2021). A federated deep learning framework for 3d brain mri images. In 2021 International Joint Conference on Neural Networks (IJCNN), pp. 1–6, IEEE. http://dx.doi.org/10.1109/IJCNN52387.2021.9534376
X. Li, Y. Gu, N. Dvornek, L. H. Staib, P. Ventola, and J. S. Duncan. (2020). Multisite fmri analysis using privacy-preserving federated learning and domain adaptation: Abide results. Medical Image Analysis, vol. 65, p. 101765. https://doi.org/10.1016/j.media.2020.101765
M. Islam, M. T. Reza, M. Kaosar, and M. Z. Parvez. (2023). Effectiveness of federated learning and cnn ensemble architectures for identifying brain tumors using mri images. Neural Processing Letters, vol. 55, no. 4, pp. 3779– 3809. https://doi.org/10.1007/s11063-022-11014-1
A. Naeem, T. Anees, R. A. Naqvi, and W.-K. Loh. (2022). A comprehensive analysis of recent deep and federated-learning-based methodologies for brain tumor diagnosis. Journal of Personalized Medicine, vol. 12, no. 2, p. 275. https://doi.org/10.3390/jpm12020275
D. Ng, X. Lan, M. M.-S. Yao, W. P. Chan, and M. Feng. (2021). Federated learning: a collaborative effort to achieve better medical imaging models for individual sites that have small labelled datasets. Quantitative Imaging in Medicine and Surgery, vol. 11, no. 2, p. 852. https://doi.org/10.21037/qims-20-595
Z. Wang and I. Voiculescu. (2023). Weakly supervised medical image segmentation through dense combinations of dense pseudo-labels. In MICCAI Workshop on Data Engineering in Medical Imaging, pp. 1–10, Springer. https://doi.org/10.1007/978-3-031-44992-5_1
L. Yu, S. Wang, X. Li, C.-W. Fu, and P.-A. Heng. (2019). Uncertainty-aware self-ensembling model for semi-supervised 3d left atrium segmentation. In Medical Image Computing and Computer Assisted Intervention–MICCAI 2019: 22nd International Conference, Shenzhen, China, October 13–17, 2019, Proceedings, Part II 22, pp. 605–613, Springer. https://doi.org/10.48550/arXiv.1907.07034
H. Peiris, Z. Chen, G. Egan, and M. Harandi. (2021). Duosegnet: adversarial dualviews for semi-supervised medical image segmentation. In Medical Image Computing and Computer Assisted Intervention–MICCAI 2021: 24th International Conference, Strasbourg, France, September 27–October 1, 2021, Proceedings, Part II 24, pp. 428–438, Springer. https://doi.org/10.48550/arXiv.2108.11154
Z. Wang, W. Zhao, Z. Ni, and Y. Zheng. (2022). Adversarial vision transformer for medical image semantic segmentation with limited annotations. In 33rd British Machine Vision Conference 2022, BMVC 2022, London, UK, November 21-24, 2022, BMVA Press. https://bmvc2022.mpi-inf.mpg.de/1002/
G. Koch, R. Zemel, R. Salakhutdinov, et al. (2015). Siamese neural networks for one-shot image recognition. In ICML deep learning workshop, Lille. https://api.semanticscholar.org/CorpusID:13874643
N. Bhagwat, J. D. Viviano, A. N. Voineskos, M. M. Chakravarty, A. D. N. Initiative, et al. (2018). Modeling and prediction of clinical symptom trajectories in alzheimer’s disease using longitudinal data. PLoS computational biology, vol. 14, no. 9, p. e1006376. https://doi.org/10.1371/journal.pcbi.1006376
T. Chen, Z. Lu, Y. Yang, Y. Zhang, B. Du, and A. Plaza. (2022). A siamese network based u-net for change detection in high resolution remote sensing images. IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing, vol. 15, pp. 2357–2369. https://doi.org/10.1109/JSTARS.2022.3157648
F. Xu, H. Ma, J. Sun, R. Wu, X. Liu, and Y. Kong. (2019). Lstm multi-modal unet for brain tumor segmentation. In 2019 IEEE 4th international conference on image, vision and computing (ICIVC), pp. 236–240, IEEE. https://doi.org/10.1109/ICIVC47709.2019.8981027
S. Li, H. Lei, F. Zhou, J. Gardezi, and B. Lei. (2019). Longitudinal and multi- modal data learning for parkinson’s disease diagnosis via stacked sparse auto-encoder. In 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), pp. 384–387, IEEE. https://doi.org/10.1109/ISBI.2019.8759385
K. H. Leung, S. P. Rowe, M. G. Pomper, and Y. Du. (2021). A three-stage, deep learning, ensemble approach for prognosis in patients with parkinson’s disease. EJNMMI research, vol. 11, no. 1, pp. 1–14. https://doi.org/10.1186/s13550-021-00795-6
K. Simonyan and A. Zisserman. (2014). Very deep convolutional networks for large-scale image recognition. arXiv preprint arXiv:1409.1556. https://doi.org/10.48550/arXiv.1409.1556
G. Huang, Z. Liu, L. Van Der Maaten, and K. Q. Weinberger. (2017). Densely connected convolutional networks. In Proceedings of the IEEE conference on computer vision and pattern recognition, pp. 4700–4708. https://doi.org/10.48550/arXiv.1608.06993
C. Szegedy, V. Vanhoucke, S. Ioffe, J. Shlens, and Z. Wojna. (2016). Rethinking the inception architecture for computer vision. In Proceedings of the IEEE conference on computer vision and pattern recognition, pp. 2818–2826. https://doi.org/10.48550/arXiv.1512.00567
M. Shaban. (2023). Deep learning for parkinson’s disease diagnosis: A short survey. Computers, vol. 12, no. 3, p. 58. https://doi.org/10.3390/computers12030058